Files for genomics format with tag GZIP format



30 files

PrecisionFDA Truth Challenge V2 submission Submission name: Seven Bridges GRAF - Illumina Participant: Seven Bridges Genomics Technology: Illumina Ca

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entri

PrecisionFDA Truth Challenge V2 submission Submission name: Seven Bridges GRAF - Illumina Participant: Seven Bridges Genomics Technology: Illumina Ca

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entri

PrecisionFDA Truth Challenge V2 submission Submission name: Seven Bridges GRAF - Illumina Participant: Seven Bridges Genomics Technology: Illumina Ca

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entri

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entri

PrecisionFDA Truth Challenge V2 submission Submission name: DeepVariant PacBio Participant: The Genomics Team in Google Health Category: All Benchmar

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entri

PrecisionFDA Truth Challenge V2 submission Submission name: DeepVariant PacBio Participant: The Genomics Team in Google Health Category: All Benchmar

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entri

PrecisionFDA Truth Challenge V2 submission Submission name: DeepVariant PacBio Participant: The Genomics Team in Google Health Category: All Benchmar

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entri

PrecisionFDA Truth Challenge V2 submission Submission name: Combination of Illumina, PacBio HIFI, and Oxford Nanopore submission Model2 Participant:

PrecisionFDA Truth Challenge V2 submission Submission name: Combination of Illumina, PacBio HIFI, and Oxford Nanopore submission Model2 Participant:

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entri

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entri

PrecisionFDA Truth Challenge V2 submission Submission name: Combination of Illumina, PacBio HIFI, and Oxford Nanopore submission Model2 Participant:

PrecisionFDA Truth Challenge V2 submission Submission name: PacBio HIFI only submission Participant: Sentieon Technology: PacBio Category: MHC/Diffic

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entri

PrecisionFDA Truth Challenge V2 submission Submission name: PacBio HIFI only submission Participant: Sentieon Technology: PacBio Category: MHC/Diffic

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entrie

PrecisionFDA Truth Challenge V2 submission Submission name: PacBio HIFI only submission Participant: Sentieon Technology: PacBio Category: MHC/Diffic

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entrie

This GCA_000001405.15_GRCh38_no_alt_analysis_set.fasta.gz is the same as the GRC one, except it is compressed with htslib bgzip to enable indexing. F

Index file for GCA_000001405.15_GRCh38_no_alt_analysis_set.fasta.gz (FL_e65105.fe)

For GRCh38 (aka hg38), GIAB generally uses a masked GRCh38 reference with no ALT loci nor hs38d1 decoy sequences. We do not use ALT loci because ther

Index file for GCA_000001405.15_GRCh38_no_alt_analysis_set_maskedGRC_exclusions.fasta.gz (FL_2f5bb1.3e)

For GRCh38 (aka hg38), GIAB generally uses a masked GRCh38 reference with no ALT loci nor hs38d1 decoy sequences. We do not use ALT loci because there

Index file for GCA_000001405.15_GRCh38_no_alt_analysis_set_maskedGRC_exclusions_v2.fasta.gz (FL_1d71ba.bb)