Files for genomics format with tag VCF



30 files

PrecisionFDA Truth Challenge V2 submission Submission name: Seven Bridges GRAF - Illumina Participant: Seven Bridges Genomics Technology: Illumina Category: MHC Individual: HG002-son

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entries: 4913962, Failed to map: 138409 Submission name: Seven Bridges GRAF - Illumina Participant: Seven Bridges Genomics Technology: Illumina Category: MHC Individual: HG002-son

PrecisionFDA Truth Challenge V2 submission Submission name: Seven Bridges GRAF - Illumina Participant: Seven Bridges Genomics Technology: Illumina Category: MHC Individual: HG003-father

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entries: 4893407, Failed to map: 140879 Submission name: Seven Bridges GRAF - Illumina Participant: Seven Bridges Genomics Technology: Illumina Category: MHC Individual: HG003-father

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entries: 4967806, Failed to map:140465 Submission name: Seven Bridges GRAF - Illumina Participant: Seven Bridges Genomics Technology: Illumina Category: MHC Individual: HG004-mother

PrecisionFDA Truth Challenge V2 submission Submission name: Seven Bridges GRAF - Illumina Participant: Seven Bridges Genomics Technology: Illumina Category: MHC Individual: HG004-mother

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entries: 5351977, Failed to map: 447651 Submission name: DeepVariant PacBio Participant: The Genomics Team in Google Health Category: All Benchmark Regions Technology: PacBio Individual: HG002-son

PrecisionFDA Truth Challenge V2 submission Submission name: DeepVariant PacBio Participant: The Genomics Team in Google Health Category: All Benchmark Regions Technology: PacBio Individual: HG002-son

PrecisionFDA Truth Challenge V2 submission Submission name: DeepVariant PacBio Participant: The Genomics Team in Google Health Category: All Benchmark Regions Technology: PacBio Individual: HG003-father

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entries: 5332475, Failed to map: 451795 Submission name: DeepVariant PacBio Participant: The Genomics Team in Google Health Category: All Benchmark Regions Technology: PacBio Individual: HG003-father

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entries: 5402308, Failed to map: 455720 Submission name: DeepVariant PacBio Participant: The Genomics Team in Google Health Category: All Benchmark Regions Technology: PacBio Individual: HG004-mother

PrecisionFDA Truth Challenge V2 submission Submission name: DeepVariant PacBio Participant: The Genomics Team in Google Health Category: All Benchmark Regions Technology: PacBio Individual: HG004-mother

PrecisionFDA Truth Challenge V2 submission Submission name: Combination of Illumina, PacBio HIFI, and Oxford Nanopore submission Model2 Participant: Sentieon Technology: Multi Category: MHC Individual: HG002-son

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entries: 4791098, Failed to map: 63026 Submission name: Combination of Illumina, PacBio HIFI, and Oxford Nanopore submission Model2 Participant: Sentieon Technology: Multi Category: MHC Individual: HG002-son

PrecisionFDA Truth Challenge V2 submission Submission name: Combination of Illumina, PacBio HIFI, and Oxford Nanopore submission Model2 Participant: Sentieon Technology: Multi Category: MHC Individual: HG003-father

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entries: 4771162, Failed to map: 64227 Submission name: Combination of Illumina, PacBio HIFI, and Oxford Nanopore submission Model2 Participant: Sentieon Technology: Multi Category: MHC Individual: HG003-father

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entries: 4808694, Failed to map: 64465 Submission name: Combination of Illumina, PacBio HIFI, and Oxford Nanopore submission Model2 Participant: Sentieon Technology: Multi Category: MHC Individual: HG004-mother

PrecisionFDA Truth Challenge V2 submission Submission name: Combination of Illumina, PacBio HIFI, and Oxford Nanopore submission Model2 Participant: Sentieon Technology: Multi Category: MHC Individual: HG004-mother

PrecisionFDA Truth Challenge V2 submission Submission name: PacBio HIFI only submission Participant: Sentieon Technology: PacBio Category: MHC/Difficult-to-Map Regions Individual: HG002-son

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entries: 7662474, Failed to map: 2132757 Submission name: PacBio HIFI only submission Participant: Sentieon Technology: PacBio Category: MHC/Difficult-to-Map Regions Individual: HG002-son

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entries: 7666238, Failed to map: 2156696 Submission name: PacBio HIFI only submission Participant: Sentieon Technology: PacBio Category: MHC/Difficult-to-Map Regions Individual: HG003-father

PrecisionFDA Truth Challenge V2 submission Submission name: PacBio HIFI only submission Participant: Sentieon Technology: PacBio Category: MHC/Difficult-to-Map Regions Individual: HG003-father

PrecisionFDA Truth Challenge V2 submission Submission name: PacBio HIFI only submission Participant: Sentieon Technology: PacBio Category: MHC/Difficult-to-Map Regions Individual: HG004-mother

PrecisionFDA Truth Challenge V2 submission lifted over to hg19 with Crossmap.py v0.5.2 and chain file hg38ToHg19.over.chain.gz from UCSC: Total entries: 7710351, Failed to map: 2147400 Submission name: PacBio HIFI only submission Participant: Sentieon Technology: PacBio Category: MHC/Difficult-to-Map Regions Individual: HG004-mother

This file is v4.2.1 high-confidence SNV, small indel, and homozygous reference calls for the Genome in a Bottle (GIAB) sample HG002 (aka AJ son) for GRCh37. The vcf and bed (FL_484b76.4.2.1) files are intended to be used in conjunction to benchmark accuracy of small variant calls.

This file is v4.2.1 high-confidence SNV, small indel, and homozygous reference calls for the Genome in a Bottle (GIAB) sample HG002 (aka AJ son) for GRCh38. The vcf and bed (FL_16420c.4.2.1) files are intended to be used in conjunction to benchmark accuracy of small variant calls.

This file is v4.2.1 high-confidence SNV, small indel, and homozygous reference calls for the Genome in a Bottle (GIAB) sample HG0023(aka AJ father) for GRCh37. The vcf and bed (FL_d3ce06.4.2.1) files are intended to be used in conjunction to benchmark accuracy of small variant calls.

This file is v4.2.1 high-confidence SNV, small indel, and homozygous reference calls for the Genome in a Bottle (GIAB) sample HG0023(aka AJ father) for GRCh38. The vcf and bed (FL_63406f.4.2.1) files are intended to be used in conjunction to benchmark accuracy of small variant calls.

This file is v4.2.1 high-confidence SNV, small indel, and homozygous reference calls for the Genome in a Bottle (GIAB) sample HG002 (aka AJ son) for GRCh37. The vcf and bed (FL_33a39d.4.2.1) files are intended to be used in conjunction to benchmark accuracy of small variant calls.

This file is v4.2.1 high-confidence SNV, small indel, and homozygous reference calls for the Genome in a Bottle (GIAB) sample HG002 (aka AJ son) for GRCh38. The vcf and bed (FL_c8fdfb.4.2.1) files are intended to be used in conjunction to benchmark accuracy of small variant calls.