Input Files

hg38chr22.fasta

hg38 reference sequences for chromosome 22. No alternate or unlocalized sequences are included. Comprised of sequences chr22, chr22_KI270731v1_random, chr22_KI270732v1_random, chr22_KI270733v1_random, chr22_KI270734v1_random, chr22_KI270735v1_random, chr22_KI270736v1_random, chr22_KI270737v1_random, chr22_KI270738v1_random, chr22_KI270739v1_random

ENCFF001RTP.fasta

Ambion spike-in concentrations and subgroups for mix 1 and mix 2

mergedGTF.gtf

GTF created by combining gencode annotations, gencode transcriptome annotations and spike-in fasta. File produced with GTF.awk.

./

Just specifies the directory to put output files. Likely empty.