bbmap

Version:
38.90_0.1.0

Identifier: TL_c81cef.90

Tool

Description

BBMap is a fast splice-aware aligner for RNA and DNA. It is faster than almost all short-read aligners, yet retains unrivaled sensitivity and specificity, particularly for reads with many errors and indels.

Biostars

Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remove duplicates.
BBSketch - A Tool for Rapid Sequence Comparison
Introducing FilterByTile: Remove Low-Quality Reads Without Adding Bias
Yes .. BBMap can do that! - Part II randomreads (read simulation), demuxbyname/filterbyname, bbsplit (read binning/decontamination) and pileup (coverage stats)
Yes .. BBMap can do that! - Part I : bbmap (aligner), bbduk (scan/trim), repair (fix PE reads) and reformat (format conversions)
Yes .. BBMap can do that! - Part III clumpify (mark (and dedupe) duplicates without alignment), mutate (create mutant genomes) and other miscellaneous tools
Interpreting bbduk histogram headers and contents
Estimaing insert size from a pair-end library using bbmap
JGI's Taxonomy Server
dedupe from BBMAP suite woes with memory and stdout
Introducing CrossBlock, a BBTool for removing cross-contamination
BBmap : how to output only unique alignment
Over-hang penalty in alignment process
Snakemake and BBsplit.sh for filtrate human reads : memory management
Clumpify Input via Process Substitution
Suggestions for which genomes to use when removing microbial contamination with BBsplit
BBMap tool error - randomreads.sh
BBDuk output different sized paired end reads
Problem in doing reference based alignment using BBMap
BBMap output meaning

bbmap

Version:
38.90_0.1.0

Identifier: TL_c81cef.90

Tool

Description

Links

Tags

Biostars

bbmap

Version:38.90_0.1.0

Identifier: TL_c81cef.90

Tool

Description

Links

Tags

Biostars

Version:
38.90_0.1.0