bcftools
Version:1.11
1.11
Identifier: TL_6b0c16.cb
Tool
Description
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.
Subtools
- bcftools concat
concatenate VCF/BCF files from the same set of samples
- bcftools norm
normalize indels
- bcftools merge
merge VCF/BCF files files from non-overlapping sample sets
- bcftools reheader
modify VCF/BCF header, change sample names
- bcftools filter
filter VCF/BCF files using fixed thresholds
- bcftools mpileup
multi-way pileup producing genotype likelihoods
- bcftools index
index VCF/BCF
Author(s)
Author(s)
- Heng Li