bedtools

bedtools cluster

bedtools cluster

Version:
2.29.x
Identifier: TL_43392c_06.c8
Tool

Description


Similar to merge, cluster report each set of overlapping or “book-ended” features in an interval file. In contrast to merge, cluster does not flatten the cluster of intervals into a new meta-interval; instead, it assigns an unique cluster ID to each record in each cluster. This is useful for having fine control over how sets of overlapping intervals in a single interval file are combined.

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