bedtools

bedtools pairtopair

bedtools pairtopair

Version:
2.29.x
Identifier: TL_43392c_ae.c8
Tool

Description


pairToPair compares two BEDPE files in search of overlaps where each end of a BEDPE feature in A overlaps with the ends of a feature in B. For example, using pairToPair, one could screen for the exact same discordant paired-end alignment in two files. This could suggest (among other things) that the discordant pair suggests the same structural variation in each file/sample.

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