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bowtie
Version:
1.2.0
Identifier:
TL_af1548.62
Tool
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Overview
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Description
Bowtie is an ultrafast, memory-efficient short read aligner.
Subtools
bowtie build
build the bwt index
bowtie align
perform the Bowtie alignment
Author(s)
Ben Langmead
Links
http://bowtie-bio.sourceforge.net/index.shtml
https://galaxy.pasteur.fr/tool_runner?tool_id=toolshed.pasteur.fr/repos/odoppelt/bowtie/bowtie_wrapper/0.12.7
http://bowtie-bio.sourceforge.net/manual.shtml
Tags
Mapping
Genomics
Sequencing
Sequence alignment
Biostars
Mapping Reads With Bwa And Bowtie
Attention: Bowtie2 And Multiple Hits
Burrow-Wheeler Alignment
Bowtie Pair-End Broken?
How Fundamental Is The 4 Gb Size Limit For Building Burrows-Wheeler Indices
Open source bioinformatics tools: Blaster, Primer Factory, Labtools
what is in the fasta.fai
Best Way To Get Truly Unique Reads In Bowtie/Sam?
Samtools "Eof Marker Is Absent" Error Only In Version 0.1.19 ?
Mapping To Genome With Ambiguous Reference Characters (R,Y,K,M,S,W Etc.)
Which Aligner Should I Use For Mapping Bacterial Rna-Seq Data
How Do I Get Some Basic Counts From Readaligned?
What Will Happen If One Read Can Map To Two Regions?
A Question About The Sam Entry For A Query Aligned To Multiple Places
An Alternative To Blastx With Speed Similar To Bowtie
Bowtie Alignment And Low Percentage Of Mapped Reads
Understanding Burrows–Wheeler Transform For Sequence Alignment
Convert Bowtie Output To Bwa
Exact Matching With Bowtie, Blat And Blast+
Bowtie2, -M Alignment/Reporting Mode
