truwl

BETA
ProductSolutionsWorkflows

bowtie

Version:
1.2.0
Identifier: TL_af1548.62
Tool
Tweet
OverviewRelated

Description


Bowtie is an ultrafast, memory-efficient short read aligner.

Subtools

  • bowtie build

    build the bwt index

  • bowtie align

    perform the Bowtie alignment

Author(s)

  • Ben Langmead

Links

  • http://bowtie-bio.sourceforge.net/index.shtml

  • https://galaxy.pasteur.fr/tool_runner?tool_id=toolshed.pasteur.fr/repos/odoppelt/bowtie/bowtie_wrapper/0.12.7

  • http://bowtie-bio.sourceforge.net/manual.shtml

Tags

Mapping
Genomics
Sequencing
Sequence alignment

Biostars

  • Mapping Reads With Bwa And Bowtie
  • Attention: Bowtie2 And Multiple Hits
  • Burrow-Wheeler Alignment
  • Bowtie Pair-End Broken?
  • How Fundamental Is The 4 Gb Size Limit For Building Burrows-Wheeler Indices
  • Open source bioinformatics tools: Blaster, Primer Factory, Labtools
  • what is in the fasta.fai
  • Best Way To Get Truly Unique Reads In Bowtie/Sam?
  • Samtools "Eof Marker Is Absent" Error Only In Version 0.1.19 ?
  • Mapping To Genome With Ambiguous Reference Characters (R,Y,K,M,S,W Etc.)
  • Which Aligner Should I Use For Mapping Bacterial Rna-Seq Data
  • How Do I Get Some Basic Counts From Readaligned?
  • What Will Happen If One Read Can Map To Two Regions?
  • A Question About The Sam Entry For A Query Aligned To Multiple Places
  • An Alternative To Blastx With Speed Similar To Bowtie
  • Bowtie Alignment And Low Percentage Of Mapped Reads
  • Understanding Burrows–Wheeler Transform For Sequence Alignment
  • Convert Bowtie Output To Bwa
  • Exact Matching With Bowtie, Blat And Blast+
  • Bowtie2, -M Alignment/Reporting Mode
© xD Bio, Inc. 2023, All rights reserved.
Privacy PolicyTerms of ServiceCode of ConductFAQs
YouTubeSlackMedium
This site is protected by reCAPTCHA and the Google Privacy Policy and Terms of Service apply.