bwa

Version:
0.7.x
Identifier: TL_a6be17.8e
Tool

Description


Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

Subtools

  • bwa index

    build the bwa index

  • bwa aln

    perform the bwa alignment

  • bwa samxe

    snakemake wrapper for single or paired end alignment

  • bwa samse

    single-end alignment

  • bwa mem

    Align using mem algorithm. To use BWA, you need to first index the genome with `bwa index'. There are three alignment algorithms in BWA `mem', `bwasw', and `aln/samse/sampe'. If you are not sure which use, try `bwa mem' first.

  • bwa BWA-Index

    index sequences in the FASTA format

  • bwa sampe

    paired end alignment