Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
build the bwa index
perform the bwa alignment
snakemake wrapper for single or paired end alignment
Align using mem algorithm. To use BWA, you need to first index the genome with `bwa index'. There are three alignment algorithms in BWA `mem', `bwasw', and `aln/samse/sampe'. If you are not sure which use, try `bwa mem' first.
index sequences in the FASTA format
paired end alignment