ChromHMM is software for learning and characterizing chromatin states.
ChromHMM annotation new cell line
Download ChromHMM tracks H3K27ac marks (as BED file) from Roadmap
ChromHMM: chromatin states to genome % coverage?
Questions related to ChromHMM+using MACS2 peak calling output bed file as input for ChromHMM?
ChromHMM Output Descriptions
ChromHMM 15 State Descriptions (Genic Enhancer)
ChromHMM - annotation of chromatin states
"htsjdk.samtools.SAMFormatException: Error parsing text SAM file. Not enough fields" wrong message in the chromHMM run
Comparing open chromatin data to ChromHMM model
How to apply ChromHMM on ChromImpute output?
Color Bed Track Annotations by Name
Why is chromHMM's binarizeBed with the -peaks argument not recommended for broad peaks?
ChromHMM OverlapEnrichment Output Description
Chromatin states for S. cerevisiae
ChromHMM segmenting only 1 chromosome
Question about ChromHMM overlap enrichment
can one assess the how well the output of ChromHMM fits the data given to it?