chromhmm

Version:
1.21
Identifier: TL_d78180.71
Tool

Description


ChromHMM is software for learning and characterizing chromatin states.

Subtools

  • chromhmm chromhmm-learnmodel

    takes a set of binarized data files, learns chromatin state models, and by default produces a segmentation, generates browser output with default settings, and calls OverlapEnrichment and NeighborhoodEnrichments with default settings for the specified genome assembly. A webpage is a created with links to all the files and images created.

  • chromhmm chromhmm-binarizebed

    converts a set of bed files of aligned reads into binarized data files for model learning and optionally prints the intermediate signal files