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cnvkit
Version:
0.9.8
Identifier:
TL_0171fb.23
Tool
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Overview
Relationships
Description
CNVkit is a software toolkit to infer and visualize copy number from targeted DNA sequencing data.
Subtools
cnvkit batch
cnvkit vcf_export
export cnvs as a vcf
Links
https://github.com/etal/cnvkit
http://cnvkit.readthedocs.io/en/stable/
Tags
DNA structural variation
Variant calling
Biostars
CNVkit, robust genome-wide copy number detection from DNA sequencing
Help with understanding CNVkit output
CNVkit - creating a reference panel from 'normal' parts of tumour bams
CNVkit Segments vs Bins
How are the log2 values in CNVkit .cnr files calculated?
CNVKIT import errors
cnvkit segmetrics on multiple files
tumor/normal WGS with CNVkit has many small segments with small copy number changes
CNV detection of single cell genome sequencing
How to get the range of LOH?
CNV not called
CNVkit for germline samples
Why do I get a weird copy number in the tumour?
CNVkit assuming male for female samples
How is the "weight" calculated by CNVkit ?
Explications about call function of CNVkit
cnvkit output understanding
Draw centromere on chromosome scatter plot
CNVkit reference.cnn .cnr .cns log ratio
Using CNVkit for hybrid capture data -- the huge CNV regions in results does not make any sense
