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cutadapt
Version:
2.10
Identifier:
TL_f8ebe1.24
Tool
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Overview
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Description
Find and remove adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.
Subtools
cutadapt se
Trim single-end reads using cutadapt.
cutadapt pe
trim paired reads
Links
https://pypi.python.org/pypi/cutadapt
https://galaxy.pasteur.fr/tool_runner?tool_id=toolshed.pasteur.fr/repos/mvalade/cutadapt_v2/cutadapt/1.6
https://cutadapt.readthedocs.io/en/stable/
Tags
Genomics
Probes and primers
Sequencing
Sequence trimming
Biostars
Differences between trimming tools: cutadapt, bbduk and sickle
cutadapt for trimming reads to specific length
Trimming Illumina universal adapters using cutadapt proving insufficient
How to - Install Python packages in a virtual environment (virtualenv)
cutadapt error while performing Trim_Galore
Using cutadapt over multiple adapters
Issues with adapter trimming when there are no adapters?
cutadapt loop and paired-end reads
Illumina index adapter trimming of FASTQ files using Cutadapt/TrimGalore
What's the difference between Trim galore and Cutadapt when it comes to quality trimming ?
miRNA fastqc sequence length distribution with UMI
How to apply CUTADAPT on multiple fastq files using linux?
cutadapt: forward and reverse adapter sequence options
Cutadapt paired end reads with 1 adapter list fasta
comparing softwares for trimming adaptors
CGHub/TCGA RNA-Seq data trimming adapters
Where to get list of all Illumina adapters
Cutadapt installation problem
Trim barcode 3'
piping cutadapt --paired-output into bwa ? logs are written to stdout
