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deeptools
Version:
3.5.0_0.1.0
Identifier:
TL_8b3ec0.7b
Tool
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Overview
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Description
User-friendly tools for the normalization and visualization of deep-sequencing data.
Subtools
deeptools deepTools_plotHeatmap
deeptools deepTools_plotProfile
deeptools deepTools_computeMatrix_reference-point
deeptools deepTools_bamCoverage
deeptools deepTools_computeMatrix_scale-regions
Links
https://deeptools.readthedocs.io/en/latest/
https://deeptools.readthedocs.io/en/latest/content/api.html
Tags
Genomics
ChIP-seq
Standardisation and normalisation
Visualisation
Biostars
Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
deepTools2 : User-friendly tools for exploring deep-sequencing data
merging two bigwig files
Deeptools: computeMatrix - Traceback
Normalization of BigWig files using TMM from edgeR
Same data, very different heatmaps
Deeptools heatmap analysis - graphing unique clusters of heatmap
plotProfile with mean of bigwig files
GC-BIAS correction for BAM file
Plot read density across a normalized gene model for its each exon/intron length
Plotting multiple signal files against a single genomic region
extract small heatmap from big one deeptools
Deeptools plotHeatmap: too much black! missing data assigned incorrectly
Visualize top 10 increasing peaks of the ATAC-seq data
Overlapping regions in a BedGraph file
Deeptools Sorting for score values
Deeptools sample scaling
GC bias correction deepTools2
bamCompare log2 ratio p-value
deepTools - plotHeatmap, move colorbar to the bottom
