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epic

Version:
0.2.7
Identifier: TL_020be1.fa
Tool
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Description


EPIC is a R package and Shiny app to estimate the proportions of different cell types from bulk gene expression data.

Subtools

  • epic peaks

Code Repository

  • https://github.com/GfellerLab/EPIC

Links

  • http://epic.gfellerlab.org

  • https://github.com/scvannost/epicpy

Tags

Immunoinformatics
Gene expression
RNA-Seq
Gene transcripts

Biostars

  • ChIP-Seq: When reducing paired end reads to one coordinate, should I use the midpoint?
  • Illumina methylationEPIC demo data in IDAT format?
  • EPIC array annotation
  • Compare 450k with EPIC
  • Appropriate Pipeline for Methylation EPIC array analysis?
  • Deconvolution of bulk RNA sequencing PBMC: different results for different methods
  • How to check if baseline methylation levels influence response to intervention?
  • How do I analyze MGMT methylation status from EPIC array data?
  • EPIC methylation manifest GRch38 query
  • Skewed beta-distribution from Methylation EPIC array data
  • Human Brain Cells (450k/EPIC Array)
  • How can I find the region coordinates of my methylation EPIC Illumina data?
  • How to deconvolute whole blood and analyzed cell type separately for EWAS
  • Determine "global" methylation from Illumina EPIC data?
  • Normalization for combined data from multiple sources: ssNoob + BMIQ/quantile?
  • ChAMP error in EPIC data import
  • Can EPIC call peaks on files without control?
  • Current status of EPIC peak caller
  • EPIC Error calculating readlength
  • Compare control probe in 450k and EPIC
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