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epic
Version:
0.2.7
Identifier:
TL_020be1.fa
Tool
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Overview
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Description
EPIC is a R package and Shiny app to estimate the proportions of different cell types from bulk gene expression data.
Subtools
epic peaks
Code Repository
https://github.com/GfellerLab/EPIC
Links
http://epic.gfellerlab.org
https://github.com/scvannost/epicpy
Tags
Immunoinformatics
Gene expression
RNA-Seq
Gene transcripts
View all
Biostars
ChIP-Seq: When reducing paired end reads to one coordinate, should I use the midpoint?
Illumina methylationEPIC demo data in IDAT format?
EPIC array annotation
Compare 450k with EPIC
Appropriate Pipeline for Methylation EPIC array analysis?
Deconvolution of bulk RNA sequencing PBMC: different results for different methods
How to check if baseline methylation levels influence response to intervention?
How do I analyze MGMT methylation status from EPIC array data?
EPIC methylation manifest GRch38 query
Skewed beta-distribution from Methylation EPIC array data
Human Brain Cells (450k/EPIC Array)
How can I find the region coordinates of my methylation EPIC Illumina data?
How to deconvolute whole blood and analyzed cell type separately for EWAS
Determine "global" methylation from Illumina EPIC data?
Normalization for combined data from multiple sources: ssNoob + BMIQ/quantile?
ChAMP error in EPIC data import
Can EPIC call peaks on files without control?
Current status of EPIC peak caller
EPIC Error calculating readlength
Compare control probe in 450k and EPIC
