Truwl

BETA
gawk
Version:
4.1
Identifier: TL_9579db.89

Back To Tools

Overview
pattern scanning and processing language
Associations
Tool Uses
  • TL_9579db.89.1C10

    Create a combined GTF file from Gencode annotations, Gencode tRNAs, and spike-ins fasta usage: gawk -f GTF.awk genomeAnnotationGRF tRNAAnnotationGTF spikeInFasta > mergedGTF input files: genomeAnnotationGTF: main gtf file, e.g. "gencode.v19.annotation.gtf" tRNAAnnotationGTF: gtf file for tRNAs or other annotations - exons only! spikeInFasta: fasta file with spike-ins, e.g. "spikes.fixed.fasta" output file: MergedGTF: Single merged GTF file to be used for genome generation with STAR, RSEM, TopHat

  • TL_9579db.89.e9de

    Takes a headerless sam file and puts consecutive lines on single line. Pairs adjacent reads.

Workflows

No workflows found

Meta
Authors
  • AA
    Alfred Aho
  • PW
    Peter Weinberger
  • BK
    Brian Kernighan
  • PR
    Paul Rubin
  • JF
    Jay Fenlason
  • JW
    John Woods
  • DT
    David Trueman
  • AR
    Arnold Robbins