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gawk
v4.1

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Overview
pattern scanning and processing language
Associations
Tool Uses
  • gawk:4.1:342e91d9

    Takes a headerless sam file and puts consecutive lines on single line. Pairs adjacent reads.

  • gawk:4.1:d2acb41e

    Create a combined GTF file from Gencode annotations, Gencode tRNAs, and spike-ins fasta usage: gawk -f GTF.awk genomeAnnotationGRF tRNAAnnotationGTF spikeInFasta > mergedGTF input files: genomeAnnotationGTF: main gtf file, e.g. "gencode.v19.annotation.gtf" tRNAAnnotationGTF: gtf file for tRNAs or other annotations - exons only! spikeInFasta: fasta file with spike-ins, e.g. "spikes.fixed.fasta" output file: MergedGTF: Single merged GTF file to be used for genome generation with STAR, RSEM, TopHat

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Authors
  • AA
    Alfred Aho

    Designed and implemented the original version of UNIX awk.

  • PW
    Peter Weinberger

    Designed and implemented the original version of UNIX awk.

  • BK
    Brian Kernighan

    Designed and implemented the original version of UNIX awk and continues to maintain and enhance it.

  • PR
    Paul Rubin

    Wrote gawk to be compatible with the original version of awk distributed in Seventh Edition UNIX.

  • JF
    Jay Fenlason

    Wrote gawk to be compatible with the original version of awk distributed in Seventh Edition UNIX.

  • JW
    John Woods

    Contributed a number of bug fixes.

  • DT
    David Trueman

    Made gawk compatible with the new version of UNIX awk.

  • AR
    Arnold Robbins

    Made gawk compatible with the new version of UNIX awk. Current maintainer.