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gffread
Version:
0.9.9
Identifier:
TL_b75c03.50
Tool
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Description
program for filtering, converting and manipulating GFF files
Links
https://ccb.jhu.edu/software/stringtie/gff.shtml
https://ccb.jhu.edu/software/stringtie/gff.shtml
Tags
Nucleic acids
Sequence analysis
Sequence annotation
Biostars
gffread error when extracting transcript sequences from gtf, coordinates exceed sequence length
Detect discrepancies in GFF files
Probably very simple question for gffread
free(): invalid next size (normal) Aborted (core dumped)
Can gffread extract specific region sequences from vcf or fasta file?
gffread error when converting gff to gtf
gffread conversion leaves gene_id
Gffread error: Error (GFaSeqGet): subsequence cannot be larger than...
Issue with gffread during converting gtf file to fasta
gffread "Error (GFaSeqGet): end coordinate (76134) cannot be larger than sequence length 76132"
GTF to FASTA including stop codon
Cufflinks gffread utility
GFF3 to GTF problems
Using ensembl genomes and gtf conversion
