hal

Version:
0.0.1
Identifier: TL_cde9e8.25
Tool

Description


HAL is a structure to efficiently store and index multiple genome alignments and ancestral reconstructions. HAL is a graph-based representation which provides several advantages over matrix/block-based formats such as MAF, such as improved scalability and the ability to perform queries with respect to an arbitrary reference or subtree.

Subtools

  • hal halliftover

    Annotations in BED can be lifted over between genomes using halLiftover. halLiftover does a base-by-base mapping between any two sequences in the alig