Description

Alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as to a single reference genome).

Links

• https://ccb.jhu.edu/software/hisat2/index.shtml

• https://github.com/infphilo/hisat2

• https://github.com/infphilo/hisat2/issues

• https://ccb.jhu.edu/software/hisat2/manual.shtml