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igvtools

Version:
2.5.3
Identifier: TL_8e5623.a1
Tool
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OverviewRelated

Description


The igvtools utility provides a set of tools for pre-processing data files.

Subtools

  • igvtools igvtools-totdf

    A tiled data file (TDF) file (.tdf) is a binary file that contains data that has been preprocessed for faster display in IGV.

  • igvtools igvtools-count

Links

  • https://software.broadinstitute.org/software/igv/igvtools

  • https://github.com/igvteam/igv/

  • https://github.com/igvteam/igv/issues

  • https://software.broadinstitute.org/software/igv/igvtools_commandline

Tags

Sequence analysis
Formatting
Sequence feature comparison

Biostars

  • Tdf to bed
  • I could not load GTF data at IGV("Could not create index file") Please help me :)
  • how to extract per base information (in coverage track of IGV) from .bam file
  • How to use igvtools on ubuntu?
  • Using igvtools count with bam anf bam.bai files
  • How realible samtools/ bam-readcount /igvtools /pysamstats for finding deletions/insertions?
  • java.lang.NullPointerException error in IGVtools when trying to Find Motif
  • igvtools count - how do I get it to show insertion and deletion count
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