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iqtree

Version:
2.0.3
Identifier: TL_cbac6c.a2
Tool
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Description


A fast and effective stochastic algorithm to infer phylogenetic trees by maximum likelihood. IQ-TREE compares favorably to RAxML and PhyML in terms of likelihoods with similar computing time

Subtools

  • iqtree iqtree

Code Repository

  • https://github.com/Cibiv/IQ-TREE

Links

  • http://www.iqtree.org/

Tags

Phylogenetics
Phylogenetic tree analysis
Sequence analysis

Biostars

  • Pairwise distance of rooted phylogenetic tree
  • Midpoint root tree specification.
  • Which ete3 format to parse a newick file with concordance values?
  • Generating multiple species consensus alignments for tree topology tests
  • Likelihood distance matrix ( .mldist) to .csv or .txt
  • Running iqtree in a python script?
  • Best method for phylogeny on bacterial genes
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