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macs2
Version:
2.2
Identifier:
TL_89cd0d.17
Tool
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Overview
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Description
Model-based Analysis of ChIP-seq data.
Subtools
macs2 callpeak
call peaks
Links
http://liulab.dfci.harvard.edu/MACS/
https://galaxy.pasteur.fr/tool_runner?tool_id=toolshed.pasteur.fr/repos/fmareuil/macs2/modencode_peakcalling_macs2/2.0.10.2
https://galaxy.pasteur.fr/tool_runner?tool_id=peakcalling_macs
https://galaxy.pasteur.fr/tool_runner?tool_id=toolshed.pasteur.fr/repos/fmareuil/macs14/peakcalling_macs14/1.4.2
https://github.com/taoliu/MACS/blob/macs_v1/README.rst
Tags
ChIP-seq
Molecular interactions, pathways and networks
Transcription factors and regulatory sites
Peak calling
View all
Biostars
Why does MACS2 report multiple records for the same peak region?
MACS2 --SPMR and --nolambda usage for version 2.1.2
Paired end and single end with MACS2
Help understanding MACS2 --extsize and --shift
Can be merged biological replicates?
If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
ChipSeq using MACS2 - option to not call peaks with only few reads ?
macs2 normalization on broadPeak
How much does effective genome size affect the macs2 output?
Can IGB load BED 6+3 files?
question about macs2 --broad-cutoff
MACS2 Peak Calling : Different number of peaks for each replicate
Interpreting Chip Seq Results
What does "gappedPeak" mean
MACS2 for K27me3 peak calling
how to calculate with metadata of GRanges Objects
What could be a reason for peaks called via Macs2 not appearing as real peaks in IGV?
ATAC-seq: differential peaks using macs2 bdgdiff yields strange results
ChIP-seq differential peak calling (Any way to set the window size for calling differential enriched peaks?)
MACS2 bdgpeakcall gives UnboundLocalError: local variable 'peak_content' referenced before assignment:
