Tool for discovering motifs in a group of related DNA or protein sequences. A motif is a sequence pattern that occurs repeatedly in a group of related protein or DNA sequences. This tool represents motifs as position-dependent letter-probability matrices which describe the probability of each possible letter at each position in the pattern.
- meme meme-chip
MEME-ChIP performs comprehensive motif analysis (including motif discovery) on LARGE sets of (typically nucleotide) sequences such as those identified by ChIP-seq or CLIP-seq experiments