minimap2 minimap2 index

minimap2 index

Version:
2.17
Identifier: TL_938e07_6a.48
Tool
1__author__ = "Tom Poorten"
2__copyright__ = "Copyright 2017, Tom Poorten"
3__email__ = "tom.poorten@gmail.com"
4__license__ = "MIT"
5
6from snakemake.shell import shell
7
8extra = snakemake.params.get("extra", "")
9log = snakemake.log_fmt_shell(stdout=True, stderr=True)
10
11shell(
12    "(minimap2 -t {snakemake.threads} {extra} "
13    "-d {snakemake.output[0]} {snakemake.input.target}) {log}"
14)
15