truwl

BETA

ngs-disambiguate

Version:
2016.11.10
Identifier: TL_e280c6.90
Tool
OverviewRelated

Description


Disambiguating two species in next generation sequencing data from grafted samples. Operates on DNA or RNA-seq alignments to the two species and separates the components at very high sensitivity and specificity.

Subtools

  • ngs-disambiguate

    Disambiguation algorithm for reads aligned to two species (e.g. human and mouse genomes) from Tophat, Hisat2, STAR or BWA mem

Code Repository

Links

  • bioconda

    http://bioconda.github.io/recipes/ngs-disambiguate/README.html

  • quay

    https://quay.io/repository/biocontainers/ngs-disambiguate

Tags

Sequencing
Preclinical and clinical studies
Mapping
RNA-Seq quantification

Biostars

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