picard BamIndexStats

Version:
2.20.x
Identifier: TL_e24fa5_e0.c8

Back to picard

Back To Tools

Overview

Generate index statistics from a BAM fileThis tool calculates statistics from a BAM index (.bai) file, emulating the behavior of the "samtools idxstats" command. The statistics collected include counts of aligned and unaligned reads as well as all records with no start coordinate. The input to the tool is the BAM file name but it must be accompanied by a corresponding index file.

Associations
Subtools

No subtools found

Tool Uses

No tool instances found

Workflows

No workflows found

Meta