picard

picard BamIndexStats

picard BamIndexStats

Version:
2.20.x
Identifier: TL_e24fa5_e0.c8
Tool

Description


Generate index statistics from a BAM fileThis tool calculates statistics from a BAM index (.bai) file, emulating the behavior of the "samtools idxstats" command. The statistics collected include counts of aligned and unaligned reads as well as all records with no start coordinate. The input to the tool is the BAM file name but it must be accompanied by a corresponding index file.

Tags

No Tags found

Biostars

No Biostars posts found