picard

picard CollectWgsMetrics

picard CollectWgsMetrics

Version:
2.20.x
Identifier: TL_e24fa5_ce.c8
Tool

Description


Collect metrics about coverage and performance of whole genome sequencing (WGS) experiments. This tool collects metrics about the fractions of reads that pass base- and mapping-quality filters as well as coverage (read-depth) levels for WGS analyses. Both minimum base- and mapping-quality values as well as the maximum read depths (coverage cap) are user defined. Note: Metrics labeled as percentages are actually expressed as fractions!

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