picard CollectWgsMetricsWithNonZeroCoverage

Version:
2.20.x
Identifier: TL_e24fa5_15.c8

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Overview

Collect metrics about coverage and performance of whole genome sequencing (WGS) experiments. This tool collects metrics about the percentages of reads that pass base- and mapping- quality filters as well as coverage (read-depth) levels. Both minimum base- and mapping-quality values as well as the maximum read depths (coverage cap) are user defined. This extends CollectWgsMetrics by including metrics related only to siteswith non-zero (>0) coverage. Note: Metrics labeled as percentages are actually expressed as fractions!

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