picard

picard FixMateInformation

picard FixMateInformation

Version:
2.20.x
Identifier: TL_e24fa5_0f.c8
Tool

Description


Verify mate-pair information between mates and fix if needed. This tool ensures that all mate-pair information is in sync between each read and its mate pair. If no OUTPUT file is supplied then the output is written to a temporary file and then copied over the INPUT file. Reads marked with the secondary alignment flag are written to the output file unchanged.

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