picard SetNmMdAndUqTags

Version:
2.20.x
Identifier: TL_e24fa5_85.c8

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Overview

Fixes the NM, MD, and UQ tags in a SAM file. This tool takes in a SAM or BAM file (sorted by coordinate) and calculates the NM, MD, and UQ tags by comparing with the reference. This may be needed when MergeBamAlignment was run with SORT_ORDER different from 'coordinate' and thus could not fix these tags then.

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