picard

picard collectalignmentsummarymetrics

picard collectalignmentsummarymetrics

Version:
2.22.1
Identifier: TL_e24fa5_2c.ea
Tool

Description


Produces a summary of alignment metrics from a SAM or BAM file. This tool takes a SAM/BAM file input and produces metrics detailing the quality of the read alignments as well as the proportion of the reads that passed machine signal-to-noise threshold quality filters. Note that these quality filters are specific to Illumina data; for additional information, please see the corresponding GATK Dictionary entry.

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