Converts a BED file to a Picard Interval List. This tool provides easy conversion from BED to the Picard interval_list format which is required by man

Produces a summary of alignment metrics from a SAM or BAM file. This tool takes a SAM/BAM file input and produces metrics detailing the quality of the

Collects hybrid-selection (HS) metrics for a SAM or BAM file.

extract reads from sam