preseq

Version:
2.0.x
Identifier: TL_ec197e.d1
Tool

Description


This package is aimed at predicting and number of distinct reads and how many will be expected from additional sequencing using an initial sequencing experiment. The estimates can then be used to examine the utility of further sequencing, optimize the sequencing depth, or to screen multiple libraries to avoid low complexity samples.

Subtools

  • preseq c_curve

    c_curve computes the expected yield of distinct reads for experiments smaller than the input experiment in a .bed or .bam file through resampling. The

  • preseq lc_extrap

    lc_extrap computes the expected future yield of distinct reads and bounds on the number of total distinct reads in the library and the associated conf