sambamba index

Version:
0.6.x
Identifier: TL_bf790f_6a.e9

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Overview

sambamba index builds an index for a sorted by coordinate BAM file. This step is required for effective region querying in most tools for working with BAM data. An index is by default written to the file with the same filename except .bai extension added to the end. The user can, however, override this default by providing desired output filename explicitly as an optional command-line argument.

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