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sambamba
Version:
0.6.6
Identifier:
TL_bf790f.b6
Tool
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Overview
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Description
This tool is a high performance modern robust and fast tool (and library), written in the D programming language, for working with SAM, BAM and CRAM formats.
Subtools
sambamba sort
Links
http://www.open-bio.org/wiki/Sambamba
http://www.mybiosoftware.com/sambamba-0-5-1-tools-for-working-with-sambam-data.html
https://github.com/lomereiter/sambamba
https://lomereiter.github.io/sambamba/docs/sambamba-view.html
Tags
DNA
Sequence analysis
RNA-Seq
Sequence analysis
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Biostars
Pipe from BWA to sambamba
How to extract unmapped Paired end reads from BWA output sam file
recommended way of filtering out non-karyotype ref sequences and reads from a bam file?
sambamba-sort: Error reading BGZF with BAM file
MarkDups takes much longer than expected???
How to filter both reads of paired end reads by AS when only 1 of the 2 reads has an AS below 50
Confused about sambamba syntax for unmapped and mapped
sambamba-markdup: unable to move file pointer
Sambamba-sort not enough data in stream
sambamba markdup command not working
Downsample BAM for targeted NGS panels
Bamtools stats and samtools flagstat produce different results and confusing my sambamba output.
samtools depth and sambamba depth produce different results
