sickle

Version:
1.33
Identifier: TL_979979.5d
Tool

Description


A tool that uses sliding windows along with quality and length thresholds to determine when quality is sufficiently low to trim the 3'-end of reads and also determines when the quality is sufficiently high enough to trim the 5'-end of reads.

Subtools

  • sickle se

    takes an input fastq file and outputs a trimmed version of that file

  • sickle pe

    trim paired ends