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sra-tools

Version:
2.9.1
Identifier: TL_8bc842.06
Tool
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Description


The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.

Subtools

  • sra-tools fasterq-dump

Links

  • https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=toolkit_doc

  • http://www.mybiosoftware.com/sra-software-toolkit-2-3-1-sequence-read-archive-software-toolkit.html

  • https://github.com/ncbi/sra-tools/

  • https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=toolkit_doc&f=std

  • https://github.com/ncbi/sra-tools/wiki

Tags

DNA
Genomics
Sequencing
Data handling

Biostars

  • fasterq-dump error: storage exhausted while writing file within file system module
  • hisat2 --sra-acc with paired reads producing single read output
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