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sratoolkit
Version:
2.10.3
Identifier:
TL_84a745.27
Tool
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Overview
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Description
The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.
Subtools
sratoolkit fastq_dump
sratoolkit prefetch
Links
https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=toolkit_doc
http://www.mybiosoftware.com/sra-software-toolkit-2-3-1-sequence-read-archive-software-toolkit.html
https://github.com/ncbi/sra-tools/
https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=toolkit_doc&f=std
https://github.com/ncbi/sra-tools/wiki
Tags
DNA
Genomics
Sequencing
Data handling
Biostars
SRAtoolkit error during fastq-dump
Bulk download of entire BioProject SRA
Downloading BAM files GEO/SRA
SRAtoolkit: error while running fastq-dump
ENA and SRA fastq files
sratoolkit prefetch command returns no result
Fastq-dump timeout exhausted error
Sra file to bam file error
Local non-kart file has 0 unresolved dependencies?
obtaining fastq files from NCBI
Sra-toolkit: Prefetch error
SRA tootkit to download pileup formats using SRR accessions
SRAToolkit - Delete cache after each sam-dump run
SRAtoolkit: error while running sam-dump
Is it possible to download Neisseria Meningitidis whole gneomes using fastq-dump from SRAToolkit?
How to download a 100 fastq files at once using SraToolkit fastq-dump?
sra to fastq conversion - paired-end file won't split
NCBI SRA Tools: "Extract reads in SAM or BAM format from NCBI SRA" is broken
Empty SAM files with sam-dump
sra toolkit error: path incorrect while opening manager within database module
