A wrapper tool around Cutadapt and FastQC to consistently apply quality and adapter trimming to FastQ files, with some extra functionality for MspI-digested RRBS-type (Reduced Representation Bisufite-Seq) libraries.
trim paired-end reads
trim single-end reads
Why trim_galore don't have parallel mode?
cutadapt error while performing Trim_Galore
Trim_galore on multiple fast.qz files: syntax problem
Remove low quality base calls from reads
Trim_galore with gnu parallel
TrimGalore error : Cutadapt terminated with exit signal: '512'.
Kallisto read count processed does not tally
Why mapping rate is low after adapter trimming paired-end data?
Trim_galore error: quality_trim_index()
Trim galore terminates with exit signal: '256'
Processing Order of the trim_galore
Cleanadaptors Vs Cutadapt Vs Trim_galore
trim_galore: Unable to create directory File exists
trim_galore and cutadapt to paired-end DNA sequencing
Cutadapt using issue
Why did FastQC reports get WORSE after trimming my data?