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trimmomatic
Version:
0.36
Identifier:
TL_a2e03a.4a
Tool
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Overview
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Description
A flexible read trimming tool for Illumina NGS data
Subtools
trimmomatic se
trim single end reads
trimmomatic pe
trim paired ends
Links
http://www.usadellab.org/cms/index.php?page=trimmomatic
https://galaxy.pasteur.fr/tool_runner?tool_id=toolshed.pasteur.fr/repos/odoppelt/trimmomatic/trimmomatic/0.36
http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/TrimmomaticManual_V0.32.pdf
Tags
Sequencing
Sequence analysis
Data quality management
Sequence trimming
Biostars
Trimming TruSeq Universal Adapter (Trimmomatic)
Trimmomatic output: how to include unpaired reads in the assembly?
Shell script to automate trimmomatic for multiple samples
What is the limiting factor for trimmomatic speed and how can it be increased?
Leftover adapter sequences after Trimmomatic trimming?
LEADING and TRAILING in TRIMMOMATIC
Trimmomatic not removing TruSeq3 adapters
Is trimming always better?
Trimmomatic not removing all Nextera adapters or N base calls
Minimum read length in Trimmomatic
How does sliding window work in Trimmomatic
error when running trimmomatic
Trimmomatic -> STAR
automated script to trim paired end RNA seq reads using Trimmomatic
How to remove Poly-A tails from from QuantSeq 3' FWD data using Trimmomatic
Improving the coverage of raw fastq data with Trimmomatic CROP option
Problems with Trimmomatic PE output files
Minimum length of reads after trimming for Assembly
How to find/decipher Trimmomatic Output
read trimming for small RNA NGS data
