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varscan
Version:
2.4.3
Identifier:
TL_6518d5.7a
Tool
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Overview
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Description
VarScan, an open source tool for variant detection that is compatible with several short read align-ers.
Subtools
varscan mpileup2indel
identify indels in a pileup file
varscan somatic
call somatic mutations
Author(s)
Dan Koboldt
Code Repository
https://github.com/dkoboldt/varscan
Links
http://dkoboldt.github.io/varscan/
http://dkoboldt.github.io/varscan/using-varscan.html
Tags
Sequencing
DNA polymorphism
Variant calling
Biostars
How to pipe samtools mileup with varscan trio caller?
Calling triovariants using varscan from a compressed mileup file ?
Non-cancer somatic mutation calling
Varscan Copy Number Alterration Caller, Number Of Markers
Varscan: Variant Detection In Massively Parallel Sequencing Data
Problem generating Varscn2 copynumber output
Variant Calling in Low-Complexity Regions
Variant Calling in Somatic mode
Varscan Filters Not Being Applied
Questions About Mergesegment.Pl
Varscan Copy Number Calling Workflow: Using Mergesegments.Pl After Cbc
Running THetA2 with Varscan input?
VarScan and Samtools - how to process my data?
Gold Standard for Human cancer exome sequencing
Varscan Snp Strand Information
Problem Analyzing Tumor-Normal Pairs With Varscan
Comparative Snp Analysis
Varscan, Using The Copycaller
Confusion with Varscan somatic filters
Varscan Error In Pileup2Snp
