vembrane vembrane filter

vembrane filter

Version:
0.5.1
Identifier: TL_03cccb_b2.d1
Tool
1"""Snakemake wrapper for vembrane"""
2# Snakemake wrappers are provided by Truwl to teach the internal mechanics of Snakemake recipes. View https://github.com/snakemake/snakemake-wrappers to learn how to use wrappers.
3
4__author__ = "Christopher Schröder"
5__copyright__ = "Copyright 2020, Christopher Schröder"
6__email__ = "christopher.schroeder@tu-dortmund.de"
7__license__ = "MIT"
8
9from snakemake.shell import shell
10
11log = snakemake.log_fmt_shell(stdout=False, stderr=True)
12
13extra = snakemake.params.get("extra", "")
14
15shell(
16    "vembrane filter"  # Tool and its subcommand
17    " {extra}"  # Extra parameters
18    " {snakemake.params.expression:q}"
19    " {snakemake.input}"  # Path to input file
20    " > {snakemake.output}"  # Path to output file
21    " {log}"  # Logging behaviour
22)
23