This tool is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements method

The igvtools utility provides a set of tools for pre-processing data files.

A software package with various utilities for processing alignments in the SAM format, including variant calling and alignment viewing.

An R/Bioconductor package that imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with