Tools for operation used with Sequence alignment
Tool Library list page for genomics operation with tag Sequence alignment
- bbmap
BBMap is a fast splice-aware aligner for RNA and DNA. It is faster than almost all short-read aligners, yet retains unrivaled sensitivity and specificity, particularly for reads with many errors and indels.
0 - blast
A tool that finds regions of similarity between biological sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance.
0 - bowtie
Bowtie is an ultrafast, memory-efficient short read aligner.
0 - hisat2
Alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as to a single reference genome).
0 - sambamba
This tool is a high performance modern robust and fast tool (and library), written in the D programming language, for working with SAM, BAM and CRAM formats.
0 - STAR
Ultrafast universal RNA-seq aligner
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