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Tool Library list page for genomics topic with tag 'Gene transcripts'
Arriba is a command-line tool to detect gene fusions from RNA-Seq data based on the STAR aligner. In addition to fusions, it can detect exon duplicati
EPIC is a R package and Shiny app to estimate the proportions of different cell types from bulk gene expression data.
Stand-alone Java application as well as a Java library designed to be used in larger software frameworks for exome analysis.
Trinity is a transcriptome assembler which relies on three different tools, inchworm an assembler, chrysalis which pools contigs and butterfly which a
An R/Bioconductor package that imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with