Tool Library list page for genomics topic with tag 'Genomics'



26 tools

BEDTools is an extensive suite of utilities for comparing genomic features in BED format.

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Bismark is a tool to map bisulfite treated sequencing reads and perform methylation calling in a quick and easy-to-use fashion.

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A tool that finds regions of similarity between biological sequences. The program compares nucleotide or protein sequences to sequence databases and c

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Bowtie is an ultrafast, memory-efficient short read aligner.

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Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning read

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Provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectatio

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Find and remove adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. Cleaning you

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Find and remove adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.

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User-friendly tools for the normalization and visualization of deep-sequencing data.

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User-friendly tools for the normalization and visualization of deep-sequencing data.

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User-friendly tools for the normalization and visualization of deep-sequencing data.

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DeepVariant is a deep learning-based variant caller that takes aligned reads (in BAM or CRAM format), produces pileup image tensors from them, classif

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Integrated structural variant prediction method that can discover, genotype and visualize deletions, tandem duplications, inversions and translocation

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Tool for predicting effects of variants for any genome in Ensembl or with genome annotation (via GFF). This includes vertebrates and also plants, fung

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A simple way to screen a library of short reads against a set of reference libraries. Its most common use is as part of a QC pipeline to confirm that

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Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs, indels, multi-nucleotide polymorphisms, and complex events

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Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs, indels, multi-nucleotide polymorphisms, and complex events

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High-performance visualization tool for interactive exploration of large, integrated datasets. It supports a wide variety of data types and format, in

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Short read alignment program incorporating quality scores

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This package is aimed at predicting and number of distinct reads and how many will be expected from additional sequencing using an initial sequencing

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This package is aimed at predicting and number of distinct reads and how many will be expected from additional sequencing using an initial sequencing

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Shovill is a pipeline for assembly of bacterial isolate genomes from Illumina paired-end reads. Shovill uses SPAdes at its core, but alters the steps

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The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.

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The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.

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A tool for assembling bacterial genomes from a combination of short (2nd generation) and long (3rd generation) sequencing reads.

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Tool for predicting effects of variants for any genome in Ensembl or with genome annotation (via GFF). This includes vertebrates and also plants, fung

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