Tool Library list page for genomics topic with tag 'Mapping'



8 tools

Bowtie is an ultrafast, memory-efficient short read aligner.

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Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footpri

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Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

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Fast, accurate, memory-efficient aligner for short and long sequencing reads

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A versatile pairwise aligner for genomic and spliced nucleotide sequences

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Disambiguating two species in next generation sequencing data from grafted samples. Operates on DNA or RNA-seq alignments to the two species and separates the components at very high sensitivity and specificity.

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A software package with various utilities for processing alignments in the SAM format, including variant calling and alignment viewing.

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Subread is a general-purpose read aligner which can be used to map both genomic DNA-seq reads and RNA-seq reads. It uses a new mapping paradigm called "seed-and-vote" to achieve fast, accurate and scalable read mapping. It automatically determines if a read should be globally or locally aligned, therefore particularly powerful in mapping RNA-seq reads. It supports indel detection and can map reads

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