BBMap is a fast splice-aware aligner for RNA and DNA. It is faster than almost all short-read aligners, yet retains unrivaled sensitivity and specifi

Kraken 2 is the newest version of Kraken, a taxonomic classification system using exact k-mer matches to achieve high accuracy and fast classification

Protein alignment for functional profiling whole metagenome shotgun data.

Protein-Level ASSembler (PLASS): sensitive and precise protein assembler