Tool Library list page for genomics topic with tag 'Sequence analysis'



22 tools

BamTools provides a fast, flexible C++ API & toolkit for reading, writing, and managing BAM files.

0
Watchers

A tool that finds regions of similarity between biological sequences. The program compares nucleotide or protein sequences to sequence databases and c

0
Watchers

Provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectatio

0
Watchers

Multiple sequence alignment software. The name is occassionally spelled as ClustalOmega, Clustal Ω, ClustalΩ, Clustal O, ClustalO.

0
Watchers

Sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for

0
Watchers

This tool aims to provide a QC report which can spot problems or biases which originate either in the sequencer or in the starting library material. I

0
Watchers

This tool aims to provide a QC report which can spot problems or biases which originate either in the sequencer or in the starting library material. I

0
Watchers

Collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.

0
Watchers

The Genome Analysis Toolkit (GATK) is a set of bioinformatic tools for analyzing high-throughput sequencing (HTS) and variant call format (VCF) data.

0
Watchers

The Genome Analysis Toolkit (GATK) is a set of bioinformatic tools for analyzing high-throughput sequencing (HTS) and variant call format (VCF) data.

0
Watchers

The Genome Analysis Toolkit (GATK) is a set of bioinformatic tools for analyzing high-throughput sequencing (HTS) and variant call format (VCF) data.

0
Watchers

program for filtering, converting and manipulating GFF files

0
Watchers

This tool is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements method

0
Watchers

High-performance visualization tool for interactive exploration of large, integrated datasets. It supports a wide variety of data types and format, in

0
Watchers

The igvtools utility provides a set of tools for pre-processing data files.

0
Watchers

MAFFT (Multiple Alignment using Fast Fourier Transform) is a high speed multiple sequence alignment program.

0
Watchers

Refgenie manages storage, access, and transfer of reference genome resources. It provides command-line and Python interfaces to download pre-built ref

0
Watchers

This tool is a high performance modern robust and fast tool (and library), written in the D programming language, for working with SAM, BAM and CRAM f

0
Watchers

This tool is a high performance modern robust and fast tool (and library), written in the D programming language, for working with SAM, BAM and CRAM f

0
Watchers

A software package with various utilities for processing alignments in the SAM format, including variant calling and alignment viewing.

0
Watchers

A wrapper tool around Cutadapt and FastQC to consistently apply quality and adapter trimming to FastQ files, with some extra functionality for MspI-di

0
Watchers
0
Watchers