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Tool Library list page for genomics topic with tag 'Sequence assembly'
Provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectatio
Paired-end read merger. PEAR evaluates all possible paired-end read overlaps without requiring the target fragment size as input. In addition, it impl
Protein-Level ASSembler (PLASS): sensitive and precise protein assembler
Shovill is a pipeline for assembly of bacterial isolate genomes from Illumina paired-end reads. Shovill uses SPAdes at its core, but alters the steps
St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies. SPAdes 3.9 works with Illumina or Io
A tool for assembling bacterial genomes from a combination of short (2nd generation) and long (3rd generation) sequencing reads.